STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3256KEGG: saq:Sare_2673 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase. (367 aa)    
Predicted Functional Partners:
Caci_1684
PFAM: homogentisate 12-dioxygenase; Cupin 2 conserved barrel domain protein; KEGG: sen:SACE_3944 homogentisate 1,2-dioxygenase.
 
 
 0.972
Caci_3265
(S)-2-hydroxy-acid oxidase; PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: saq:Sare_0496 (S)-2-hydroxy-acid oxidase.
 
 0.932
Caci_4107
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: predicted protein; K00104 (S)-2-hydroxy-acid oxidase.
 
 
 0.922
Caci_3266
PFAM: aminotransferase class I and II; KEGG: saq:Sare_2660 GntR family transcriptional regulator.
  
 
 0.914
Caci_1686
Fumarylacetoacetase; KEGG: sen:SACE_3942 putative fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: Domain of unknown function DUF1969; fumarylacetoacetate (FAA) hydrolase.
 
  
 0.900
Caci_3257
PFAM: Phytanoyl-CoA dioxygenase; KEGG: saq:Sare_2672 phytanoyl-CoA dioxygenase.
    0.868
Caci_3258
KEGG: saq:Sare_2671 hypothetical protein.
 
     0.814
Caci_3253
Beta-ketoacyl-acyl-carrier-protein synthase I; PFAM: Beta-ketoacyl synthase; KEGG: saq:Sare_2677 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.778
Caci_3255
PFAM: Beta-ketoacyl synthase; KEGG: saq:Sare_2674 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.777
Caci_3254
KEGG: saq:Sare_2676 hypothetical protein.
  
  
 0.751
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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