STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3299PFAM: amino acid permease-associated region; KEGG: acr:Acry_0648 amino acid permease-associated region. (491 aa)    
Predicted Functional Partners:
Caci_5265
PFAM: amino acid permease-associated region; KEGG: fal:FRAAL2998 amino acid/polyamine transporter.
  
     0.730
Caci_6652
PFAM: amino acid permease-associated region; KEGG: saq:Sare_2158 amino acid permease-associated region.
  
     0.723
Caci_1416
KEGG: afe:Lferr_1683 hypothetical protein.
 
     0.589
Caci_1740
KEGG: bch:Bcen2424_4859 natural resistance- associated macrophage protein.
 
   
 0.588
Caci_1283
PFAM: protein of unknown function DUF74; KEGG: afe:Lferr_1683 hypothetical protein.
 
     0.567
Caci_1282
KEGG: afe:Lferr_1683 hypothetical protein.
 
     0.563
Caci_2167
KEGG: scl:sce3939 hypothetical protein.
  
     0.540
Caci_8652
KEGG: bvi:Bcep1808_7470 extracellular solute- binding protein.
  
     0.528
Caci_3725
PFAM: amino acid permease-associated region; KEGG: cmi:CMM_0123 amino acid permease APC family.
  
     0.509
Caci_3300
KEGG: cms:CMS_2154 putative secreted protein.
  
    0.507
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.