STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3317PFAM: Extracellular ligand-binding receptor; KEGG: sgr:SGR_1527 putative branched-chain amino acid ABC transporter substrate-binding protein. (401 aa)    
Predicted Functional Partners:
Caci_5686
PFAM: Extracellular ligand-binding receptor; KEGG: fra:Francci3_0341 extracellular ligand- binding receptor.
  
  
  0.963
Caci_2648
PFAM: Extracellular ligand-binding receptor; KEGG: fra:Francci3_0341 extracellular ligand- binding receptor.
  
  
  0.960
Caci_8309
PFAM: inner-membrane translocator; KEGG: nca:Noca_4017 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.941
Caci_8833
PFAM: inner-membrane translocator; KEGG: fre:Franean1_5664 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.933
Caci_3319
PFAM: inner-membrane translocator; KEGG: sgr:SGR_1528 putative branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.927
Caci_3318
PFAM: inner-membrane translocator; KEGG: sgr:SGR_1528 putative branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.926
Caci_7912
PFAM: Extracellular ligand-binding receptor; KEGG: tfu:Tfu_0074 ABC branched-chain amino acid transporter substrate-binding protein.
  
  
 
0.918
Caci_5186
PFAM: Extracellular ligand-binding receptor; KEGG: sgr:SGR_1527 putative branched-chain amino acid ABC transporter substrate-binding protein.
  
  
 
0.906
Caci_3320
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgr:SGR_1529 putative branched-chain amino acid ABC transporter ATP-binding protein.
 
  
 0.905
Caci_3350
PFAM: inner-membrane translocator; KEGG: sma:SAV_7582 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.903
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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