STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3345PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: nfa:nfa32760 putative monooxygenase. (505 aa)    
Predicted Functional Partners:
Caci_8535
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rxy:Rxyl_2705 monooxygenase, FAD-binding protein.
  
     0.529
Caci_7249
PFAM: monooxygenase FAD-binding; KEGG: fal:FRAAL0529 putative oxidoreductase (partial match).
  
     0.509
Caci_3344
KEGG: npu:Npun_F3678 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein.
       0.497
Caci_3224
PFAM: monooxygenase FAD-binding; KEGG: nfa:nfa11030 putative monooxygenase.
  
     0.477
Caci_3346
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sma:SAV_590 cytidine/deoxycytidine deaminase.
  
  
 0.461
Caci_0928
PFAM: monooxygenase FAD-binding; KEGG: scl:sce0981 putative oxidoreductase.
  
     0.454
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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