STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3427TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: sma:SAV_839 non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family. (633 aa)    
Predicted Functional Partners:
Caci_7002
PFAM: Acyl transferase; KR domain protein; Beta- ketoacyl synthase; Erythronolide synthase docking; short- chain dehydrogenase/reductase SDR; phosphopantetheine- binding; KEGG: stp:Strop_2768 beta-ketoacyl synthase.
 
 0.990
Caci_7003
PFAM: short-chain dehydrogenase/reductase SDR; Beta- ketoacyl synthase; KR domain protein; Acyl transferase; Erythronolide synthase docking; phosphopantetheine- binding; NAD-dependent epimerase/dehydratase; KEGG: sma:SAV_418 modular polyketide synthase.
 
 0.985
Caci_0538
PFAM: AMP-dependent synthetase and ligase; KEGG: saq:Sare_3010 AMP-dependent synthetase and ligase.
   0.975
Caci_3506
PFAM: AMP-dependent synthetase and ligase; KEGG: fra:Francci3_3282 AMP-dependent synthetase and ligase.
   0.975
Caci_3433
PFAM: condensation domain protein; phosphopantetheine-binding; KEGG: scl:sce8257 non-ribosomal peptide synthetase.
  
0.954
Caci_6994
PFAM: Beta-ketoacyl synthase; KR domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: bpd:BURPS668_A1647 polyketide synthase, type I.
 
0.946
Caci_7001
PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; Erythronolide synthase docking; short- chain dehydrogenase/reductase SDR; phosphopantetheine- binding; KEGG: hau:Haur_3961 beta-ketoacyl synthase.
 
0.945
hemL
TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; aminotransferase class I and II; KEGG: sco:SCO4469 glutamate-1-semialdehyde aminotransferase.
  
 
 0.924
Caci_6769
PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV_1603 acyl-CoA synthetase, long-chain fatty acid:CoA ligase.
  
0.923
Caci_3426
PFAM: Thioesterase; KEGG: sma:SAV_840 thioesterase.
 
  
 0.902
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.