STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3441PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: sme:SMc03253 putative L-proline 3-hydroxylase protein. (290 aa)    
Predicted Functional Partners:
Caci_3440
TIGRFAM: chlorinating enzyme; PFAM: Phytanoyl-CoA dioxygenase; KEGG: bte:BTH_II0564 BarB2.
     
 0.788
Caci_3439
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; KEGG: ter:Tery_2968 amino acid adenylation domain- containing protein.
       0.774
Caci_3442
Hypothetical protein; KEGG: rfe:RF_0036 pyrroloquinoline quinone (coenzyme PQQ) biosynthesis protein C.
       0.773
Caci_3447
PFAM: Thioesterase; KEGG: fal:FRAAL2559 putative thioesterase.
 
     0.761
Caci_3445
PFAM: sodium/hydrogen exchanger; KEGG: Os05g0113300; hypothetical protein.
     
 0.758
Caci_3443
PFAM: fatty acid desaturase; KEGG: cti:RALTA_B1644 hypothetical protein.
       0.757
Caci_3444
TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pap:PSPA7_1565 PhzF family phenazine biosynthesis protein.
       0.757
Caci_3446
PFAM: MbtH domain protein; KEGG: sen:SACE_4284 MbtH-like protein.
       0.757
Caci_3448
PFAM: Thioesterase; KEGG: hau:Haur_1885 oleoyl-(acyl-carrier-protein) hydrolase.
 
     0.749
Caci_0509
PFAM: TrkA-N domain protein; KEGG: fal:FRAAL6687 putative potassium channel protein.
 
   
 0.645
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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