STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3530Hypothetical protein; KEGG: scl:sce6369 putative pentalenene synthase. (345 aa)    
Predicted Functional Partners:
Caci_3529
PFAM: cytochrome P450; KEGG: mmi:MMAR_0281 cytochrome P450 183B1 Cyp183B1.
     
 0.774
Caci_2724
PFAM: tryptophan halogenase; monooxygenase FAD- binding; FAD dependent oxidoreductase; KEGG: fal:FRAAL4634 putative halogenase.
  
     0.685
Caci_4136
PFAM: Curculin domain protein (mannose-binding) lectin; SMART: Curculin domain protein (mannose-binding) lectin; KEGG: rba:RB588 hypothetical protein.
  
     0.652
Caci_0530
PFAM: tryptophan halogenase; monooxygenase FAD- binding; FAD dependent oxidoreductase; KEGG: fal:FRAAL4634 putative halogenase.
  
     0.645
Caci_4958
KEGG: ace:Acel_0179 PHB depolymerase family esterase; TIGRFAM: esterase, PHB depolymerase family; PFAM: Ricin B lectin; SMART: Ricin B lectin.
  
     0.644
Caci_6582
KEGG: fre:Franean1_2552 hypothetical protein.
  
     0.636
Caci_3591
KEGG: ace:Acel_0179 PHB depolymerase family esterase; TIGRFAM: esterase, PHB depolymerase family; PFAM: cellulose-binding family II; Ig family protein; SMART: cellulose-binding family II.
  
     0.632
Caci_5166
PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: bmn:BMA10247_0632 putative lipoprotein.
  
     0.617
Caci_6200
PFAM: Terpene synthase metal-binding domain protein; KEGG: fra:Francci3_4231 terpene synthase, metal- binding.
  
     0.611
Caci_5274
PFAM: alpha-L-rhamnosidase; Amylo-alpha-16- glucosidase; KEGG: hypothetical protein.
  
     0.607
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.