STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3549PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: tfu:Tfu_1221 ketoacyl reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (261 aa)    
Predicted Functional Partners:
Caci_3550
PFAM: cyclase/dehydrase; KEGG: tfu:Tfu_1222 actinorhodin polyketide synthase bifunctional cyclase/dehydratase.
 
  
  0.990
Caci_3547
PFAM: Beta-ketoacyl synthase; KEGG: tfu:Tfu_1219 actinorhodin polyketide beta- ketoacyl synthase beta subunit / 3-oxoacyl-ACP synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 0.974
Caci_3546
PFAM: Beta-ketoacyl synthase; KEGG: tfu:Tfu_1218 actinorhodin polyketide beta- ketoacyl synthase alpha subunit / 3-oxoacyl-ACP synthase I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 0.971
Caci_3548
PFAM: phosphopantetheine-binding; KEGG: fra:Francci3_4147 phosphopantetheine-binding.
  
 0.958
Caci_6486
PFAM: Beta-ketoacyl synthase; KEGG: sco:SCO5088 actinorhodin polyketide beta- ketoacyl synthase beta subunit; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 0.948
Caci_6485
PFAM: Beta-ketoacyl synthase; KEGG: sco:SCO5087 actinorhodin polyketide beta- ketoacyl synthase alpha subunit; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 0.943
Caci_6487
PFAM: phosphopantetheine-binding; KEGG: fra:Francci3_4147 phosphopantetheine-binding.
  
  0.911
Caci_6493
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO5086 ketoacyl reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 
0.902
Caci_6488
KEGG: sco:SCO5090 actinorhodin polyketide synthase bifunctional cyclase/dehydratase.
     
  0.900
Caci_3552
PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: sen:SACE_4927 halogenase B.
  
   0.669
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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