STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3551PFAM: monooxygenase FAD-binding; KEGG: tfu:Tfu_1223 putative rifampin monooxygenase. (630 aa)    
Predicted Functional Partners:
Caci_3545
PFAM: Polyketide synthesis cyclase; KEGG: stp:Strop_2193 polyketide synthesis cyclase.
    
  0.940
Caci_3543
PFAM: monooxygenase FAD-binding; KEGG: tfu:Tfu_1216 hypothetical protein.
  
  
 
0.910
Caci_3550
PFAM: cyclase/dehydrase; KEGG: tfu:Tfu_1222 actinorhodin polyketide synthase bifunctional cyclase/dehydratase.
 
   
 0.807
Caci_3552
PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: sen:SACE_4927 halogenase B.
    
 0.798
Caci_3549
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: tfu:Tfu_1221 ketoacyl reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   0.652
Caci_3553
KEGG: rha:RHA1_ro03945 hypothetical protein.
       0.568
Caci_3224
PFAM: monooxygenase FAD-binding; KEGG: nfa:nfa11030 putative monooxygenase.
  
     0.499
Caci_3548
PFAM: phosphopantetheine-binding; KEGG: fra:Francci3_4147 phosphopantetheine-binding.
  
   0.477
Caci_7249
PFAM: monooxygenase FAD-binding; KEGG: fal:FRAAL0529 putative oxidoreductase (partial match).
  
     0.459
Caci_0928
PFAM: monooxygenase FAD-binding; KEGG: scl:sce0981 putative oxidoreductase.
  
     0.458
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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