STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3571PFAM: copper resistance protein CopC; copper resistance D domain protein; KEGG: sgr:SGR_3627 putative integral membrane protein. (564 aa)    
Predicted Functional Partners:
Caci_1125
PFAM: nuclear export factor GLE1; KEGG: sma:SAV_2334 hypothetical protein.
 
  
 0.940
Caci_3068
PFAM: nuclear export factor GLE1; KEGG: sco:SCO3967 hypothetical protein.
 
  
 0.936
Caci_3974
KEGG: sma:SAV_2334 hypothetical protein.
 
  
 0.932
Caci_3572
Hypothetical protein.
       0.768
Caci_3066
PFAM: protein of unknown function DUF461; KEGG: sco:SCO3965 hypothetical protein.
  
    0.675
Caci_3574
PFAM: peptidase C60 sortase A and B; KEGG: ace:Acel_0348 peptidase C60, sortase A and B.
 
     0.630
Caci_3573
Hypothetical protein; KEGG: GH12576 gene product from transcript GH12576- RA.
       0.629
Caci_3576
PFAM: blue (type 1) copper domain protein; KEGG: sco:SCO7674 secreted metal-binding protein.
 
   
 0.592
Caci_6547
KEGG: stp:Strop_1774 hypothetical protein.
  
     0.591
Caci_3575
KEGG: ace:Acel_0349 hypothetical protein.
       0.580
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.