STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3608KEGG: sma:SAV_4803 hypothetical protein. (532 aa)    
Predicted Functional Partners:
Caci_3350
PFAM: inner-membrane translocator; KEGG: sma:SAV_7582 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.821
Caci_8309
PFAM: inner-membrane translocator; KEGG: nca:Noca_4017 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.821
Caci_8833
PFAM: inner-membrane translocator; KEGG: fre:Franean1_5664 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.821
Caci_3607
Hypothetical protein.
       0.812
Caci_3609
PFAM: Methyltransferase type 11; KEGG: rba:RB3065 putative SAM-dependent methyltransferase.
       0.705
Caci_5687
PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; KEGG: sco:SCO2013 two-component system response regulator.
  
 
 0.680
Caci_1956
KEGG: sgr:SGR_5618 putative alanine-rich protein.
  
     0.597
Caci_1444
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: sen:SACE_3978 cyclic nucleotide-binding domain-containing protein.
  
     0.596
Caci_4615
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: sgr:SGR_1270 putative nucleotide-binding protein.
  
     0.594
Caci_5920
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: sen:SACE_4908 cyclic nucleotide-binding domain-containing protein.
  
     0.589
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.