STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3670KEGG: stp:Strop_1040 hypothetical protein. (238 aa)    
Predicted Functional Partners:
Caci_3669
KEGG: xfa:XF1916 coenzyme F390 synthetase.
     
 0.797
Caci_3671
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: rha:RHA1_ro04297 dipeptidase.
       0.773
Caci_3668
TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: cau:Caur_1730 glutamine amidotransferase of anthranilate synthase.
  
  
 0.772
Caci_3667
Anthranilate synthase; PFAM: Chorismate binding-like; KEGG: mka:MK0437 anthranilate/para-aminobenzoate synthase component I.
     
 0.766
Caci_8790
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
  
  
 0.628
Caci_2461
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase of the AroH class; KEGG: sma:SAV_6520 chorismate mutase.
    
 0.607
Caci_3673
PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; KEGG: bvi:Bcep1808_4931 ATP-dependent carboxylate- amine ligase domain-containing protein.
  
  
 0.605
Caci_1021
KEGG: sco:SCO4784 hypothetical protein.
  
 
 0.579
Caci_7204
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: cmi:CMM_0710 hypothetical protein.
  
 
 0.579
Caci_3672
PFAM: B3/4 domain protein; KEGG: rec:RHECIAT_CH0003108 hypothetical protein.
       0.574
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.