STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3674PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_4006 major facilitator superfamily permease. (452 aa)    
Predicted Functional Partners:
Caci_3673
PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; KEGG: bvi:Bcep1808_4931 ATP-dependent carboxylate- amine ligase domain-containing protein.
 
     0.869
trpB
Pyridoxal-phosphate dependent TrpB-like enzyme; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.780
Caci_3672
PFAM: B3/4 domain protein; KEGG: rec:RHECIAT_CH0003108 hypothetical protein.
 
     0.758
Caci_3678
PFAM: Chorismate mutase; KEGG: art:Arth_2321 chorismate mutase.
 
    0.655
Caci_3676
PFAM: NADPH-dependent FMN reductase; KEGG: lxx:Lxx06840 iron-sulfur flavoprotein.
 
     0.630
Caci_3677
PFAM: Cupin 2 conserved barrel domain protein; KEGG: sfu:Sfum_1397 cupin 2, conserved barrel domain protein.
       0.543
Caci_3679
PFAM: Carboxylyase-related protein; KEGG: kpe:KPK_3325 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein; Belongs to the UbiD family.
       0.543
Caci_3670
KEGG: stp:Strop_1040 hypothetical protein.
  
    0.532
Caci_3669
KEGG: xfa:XF1916 coenzyme F390 synthetase.
       0.530
Caci_3671
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: rha:RHA1_ro04297 dipeptidase.
       0.530
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.