STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3723KEGG: saq:Sare_1119 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI. (346 aa)    
Predicted Functional Partners:
Caci_3722
Beta-mannosidase; KEGG: tfu:Tfu_0915 beta-mannosidase.
 
     0.809
Caci_3719
PFAM: extracellular solute-binding protein family 1; KEGG: sco:SCO6231 sugar transport system sugar- binding lipoprotein.
       0.773
Caci_3720
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO6230 sugar transport system permease protein.
       0.773
Caci_3721
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO6229 sugar transport system permease protein.
       0.773
Caci_2682
PFAM: regulatory protein DeoR; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein DeoR; KEGG: sgr:SGR_290 LacI family transcriptional regulator.
  
     0.682
Caci_5702
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: sgr:SGR_5483 putative glutamate synthase (NADPH) large subunit.
    
 
 0.645
Caci_3718
PFAM: cellulose-binding family II; glycoside hydrolase family 5; SMART: cellulose-binding family II; KEGG: sma:SAV_1854 endo-1,4-beta-glucanase.
       0.412
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.