STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glgB1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (614 aa)    
Predicted Functional Partners:
Caci_3772
PFAM: glycosyl transferase group 1; KEGG: sen:SACE_6200 transferase.
 
 0.988
Caci_3232
PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: sen:SACE_6200 transferase.
 
 
 0.953
Caci_7648
PFAM: glycosyl transferase group 1; KEGG: mmp:MMP1080 glycosyl transferase, group 1.
   
 0.950
Caci_4685
PFAM: alpha amylase catalytic region; glycoside hydrolase starch-binding; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; alpha amylase all-beta; KEGG: saq:Sare_2896 alpha-amylase.
  
 
 0.933
Caci_7155
PFAM: Glucodextranase N; glycoside hydrolase 15- related; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: bid:Bind_3431 glucan 1,4-alpha-glucosidase.
  
 
 0.920
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 0.912
Caci_3233
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
  
 
0.902
Caci_6575
KEGG: sma:SAV_1400 hypothetical protein.
    
 
 0.790
Caci_5858
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: aau:AAur_0921 alpha-amylase family protein.
 
  
 0.755
Caci_3773
KEGG: gvi:gll1168 hypothetical protein.
  
  
 0.694
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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