STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3788KEGG: rha:RHA1_ro06848 ABC transporter, substrate- binding component. (473 aa)    
Predicted Functional Partners:
Caci_3787
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_4854 ABC transporter permease protein.
 
  
 0.947
Caci_3785
PFAM: HEAT domain containing protein; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sma:SAV_4852 putative oxidoreductase/heat repeat-containing protein.
 
  
 0.938
Caci_3786
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_4853 ABC transporter ATP-binding protein.
 
  
 0.917
Caci_3789
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mav:MAV_3401 hypothetical protein.
 
     0.909
Caci_3791
Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sma:SAV_4857 GntR family transcriptional regulator.
    0.861
Caci_4306
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro04945 ABC transporter, permease component.
 
  
 0.719
Caci_3780
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_1440 putative ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
  
 0.678
ssuB
ABC transporter related; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
  
 0.675
Caci_4305
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msm:MSMEG_1160 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component.
 
  
 0.670
Caci_5417
Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sco:SCO0610 GntR family transcriptional regulator.
 
    0.635
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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