STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3799PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sen:SACE_3965 putative ABC transporter ATP- binding protein. (256 aa)    
Predicted Functional Partners:
Caci_3798
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_3966 amino acid ABC transporter, permease protein.
 
 0.992
Caci_7702
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fal:FRAAL5987 amino acid ABC transporter membrane protein.
 
 0.984
Caci_2776
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nca:Noca_4574 polar amino acid ABC transporter, inner membrane subunit.
 
 0.960
Caci_3767
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_7208 ABC transporter permease protein.
 
 0.957
Caci_0210
PFAM: protein of unknown function DUF214; KEGG: saq:Sare_0223 hypothetical protein.
 
      0.897
Caci_8341
PFAM: protein of unknown function DUF214; KEGG: saq:Sare_0412 hypothetical protein.
 
      0.896
Caci_3383
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: msm:MSMEG_1200 serine/threonine-protein kinase PknD.
 
 
 0.868
Caci_7701
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: kra:Krad_1224 extracellular solute-binding protein.
 
 
 0.868
Caci_3769
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: sgr:SGR_5753 putative ABC transporter substrate-binding protein.
 
 
 0.867
Caci_6324
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rsq:Rsph17025_2503 cationic amino acid ABC transporter, periplasmic binding protein.
 
 
 0.780
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.