STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3808PFAM: extracellular solute-binding protein family 1; KEGG: efa:EF2234 sugar ABC transporter, sugar- binding protein, putative. (427 aa)    
Predicted Functional Partners:
Caci_3806
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2232 ABC transporter, permease protein.
 
 
 0.896
Caci_3807
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2233 ABC transporter, permease protein.
 
 
 0.863
Caci_3809
KEGG: aau:AAur_3929 hypothetical protein.
 
     0.857
Caci_3810
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sgr:SGR_2768 2-hydroxyacid family dehydrogenase.
 
   
 0.794
Caci_3811
PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein DeoR; KEGG: sgr:SGR_2764 DeoR family transcriptional regulator.
 
   
 0.706
Caci_3820
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_1455 ABC transporter permease protein.
 
 
 0.682
Caci_3819
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_1456 multiple sugar ABC transport permease protein.
 
  
 0.648
Caci_2611
PFAM: extracellular solute-binding protein family 1; KEGG: cmi:CMM_0270 putative sugar ABC transporter, substrate binding protein.
  
   
 0.568
Caci_7515
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_0481 binding-protein-dependent transport systems inner membrane component.
  
 
 0.534
Caci_3821
PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV_1454 ABC transporter substrate- binding protein.
  
     0.529
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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