STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3829PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: fal:FRAAL1754 hypothetical protein. (652 aa)    
Predicted Functional Partners:
Caci_7992
KEGG: sgr:SGR_2729 hypothetical protein.
  
 
 0.901
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.825
Caci_5401
KEGG: sco:SCO1664 hypothetical protein.
    
 0.765
Caci_6735
SMART: WD-40 repeat protein; KEGG: fal:FRAAL6340 WD-40 repeat-containing protein.
  
     0.642
Caci_0415
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; helicase domain protein; KEGG: sgr:SGR_1018 hypothetical protein.
   
 0.615
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.611
Caci_6844
PFAM: Tetratricopeptide TPR_4; KEGG: fal:FRAAL0472 putative ATP/GTP binding protein (partial match).
  
 0.611
Caci_0229
SMART: TIR protein; KEGG: fre:Franean1_4251 tetratricopeptide TPR_4.
  
 0.606
Caci_3830
PFAM: WD-40 repeat protein; peptidase C14 caspase catalytic subunit p20; SMART: WD-40 repeat protein; KEGG: fre:Franean1_1125 WD-40 repeat-containing serine/threonin protein kinase.
 
    
0.604
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
  0.591
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.