STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_3987SMART: Tetratricopeptide domain protein; KEGG: fre:Franean1_6801 TPR repeat-containing protein. (438 aa)    
Predicted Functional Partners:
Caci_3988
PFAM: high-affinity nickel-transporter; KEGG: sgr:SGR_651 hypothetical protein.
 
     0.960
Caci_3986
KEGG: sgr:SGR_649 hypothetical protein.
 
    0.906
Caci_1771
KEGG: mjl:Mjls_1988 hypothetical protein.
  
     0.592
Caci_1184
PFAM: zinc finger SWIM domain protein; KEGG: sco:SCO1291 hypothetical protein.
  
     0.565
Caci_5062
PFAM: Cupin 2 conserved barrel domain protein; KEGG: mjl:Mjls_4505 cupin 2 domain-containing protein.
 
     0.565
Caci_3989
Hypothetical protein.
       0.541
Caci_5971
PFAM: Cupin 2 conserved barrel domain protein; KEGG: sco:SCO1737 hypothetical protein.
 
     0.517
Caci_8046
KEGG: stp:Strop_1263 hypothetical protein.
  
     0.494
Caci_1120
PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sco:SCO6529 ATP/GTP binding protein.
 
     0.465
Caci_1121
KEGG: sco:SCO6530 hypothetical protein.
  
     0.461
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.