STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4037PFAM: TadE family protein; KEGG: fra:Francci3_1732 TadE-like. (159 aa)    
Predicted Functional Partners:
Caci_4033
PFAM: type II secretion system protein; KEGG: fra:Francci3_1734 type II secretion system protein.
 
  
 0.926
Caci_4032
PFAM: type II secretion system protein; KEGG: fre:Franean1_2593 integral membrane protein.
 
  
 0.925
Caci_4038
KEGG: fra:Francci3_1731 hypothetical protein.
 
     0.909
Caci_8745
KEGG: saq:Sare_4971 hypothetical protein.
 
  
 0.902
Caci_4029
PFAM: SAF domain protein; KEGG: fre:Franean1_2596 SAF domain-containing protein.
 
    0.899
Caci_4030
KEGG: fra:Francci3_1737 hypothetical protein.
 
     0.892
Caci_4039
Transcriptional regulator, SARP family; PFAM: Peptidoglycan-binding LysM; KEGG: fre:Franean1_2587 response regulator receiver/SARP domain-containing protein.
 
     0.884
Caci_8205
PFAM: type II secretion system protein; KEGG: sco:SCO4528 integral membrane protein.
 
  
 0.863
Caci_4028
KEGG: fre:Franean1_2797 hypothetical protein.
 
     0.862
Caci_6892
KEGG: fra:Francci3_1734 type II secretion system protein.
 
  
 0.860
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.