STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4085KEGG: fre:Franean1_2544 hypothetical protein. (241 aa)    
Predicted Functional Partners:
Caci_4080
KEGG: fre:Franean1_2548 type IV secretory pathway VirB4 protein-like protein.
     
 0.461
Caci_4083
KEGG: fre:Franean1_2546 hypothetical protein.
       0.451
Caci_4084
KEGG: fre:Franean1_2545 hypothetical protein.
       0.451
Caci_4079
KEGG: fre:Franean1_2549 hypothetical protein.
     
 0.445
Caci_4081
KEGG: fre:Franean1_2547 hypothetical protein.
       0.437
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.