STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4093KEGG: sco:SCO6845 hypothetical protein. (322 aa)    
Predicted Functional Partners:
Caci_2321
TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sgr:SGR_5984 putative uroporphyrin-III methyltransferase.
  
  
 0.881
Caci_6267
Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
 
 0.806
Caci_6308
Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
 
 0.806
Caci_7379
Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
 
 0.806
Caci_7370
Sulfite reductase (ferredoxin); PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: sco:SCO6102 nitrite/sulphite reductase.
  
  
 0.765
Caci_1075
KEGG: aoe:Clos_0772 phosphotransferase (aminonucleoside antibiotic resistance).
  
 
 0.741
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
  
 
 0.741
cysC-2
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
  
 
 0.741
Caci_5020
PFAM: molybdopterin oxidoreductase; flavodoxin/nitric oxide synthase; molybdopterin oxidoreductase Fe4S4 region; FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; molydopterin dinucleotide-binding region; KEGG: sgr:SGR_6233 putative assimilatory nitrate reductase large subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
  
 0.715
Caci_8651
PFAM: ABC transporter related; binding-protein- dependent transport systems inner membrane component; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bxe:Bxe_B1189 ABC molybdenum transporter, fused ATPase and inner membrane subunits; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.708
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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