Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Caci_3121 | Caci_4139 | Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: afe:Lferr_1679 transcriptional regulator, MarR family. | Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sen:SACE_2796 MarR family transcriptional regulator. | 0.611 |
Caci_4139 | Caci_3121 | Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sen:SACE_2796 MarR family transcriptional regulator. | Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: afe:Lferr_1679 transcriptional regulator, MarR family. | 0.611 |
Caci_4139 | Caci_4140 | Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sen:SACE_2796 MarR family transcriptional regulator. | PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mab:MAB_1923c hypothetical protein. | 0.890 |
Caci_4139 | Caci_6717 | Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sen:SACE_2796 MarR family transcriptional regulator. | PFAM: regulatory protein TetR; KEGG: kra:Krad_2217 TetR family transcriptional regulator. | 0.482 |
Caci_4140 | Caci_4139 | PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mab:MAB_1923c hypothetical protein. | Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sen:SACE_2796 MarR family transcriptional regulator. | 0.890 |
Caci_6717 | Caci_4139 | PFAM: regulatory protein TetR; KEGG: kra:Krad_2217 TetR family transcriptional regulator. | Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sen:SACE_2796 MarR family transcriptional regulator. | 0.482 |