STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4148PFAM: Ig family protein; KEGG: sma:SAV_5630 neutral zinc metalloprotease. (788 aa)    
Predicted Functional Partners:
Caci_1283
PFAM: protein of unknown function DUF74; KEGG: afe:Lferr_1683 hypothetical protein.
  
     0.614
Caci_1282
KEGG: afe:Lferr_1683 hypothetical protein.
  
     0.606
Caci_1416
KEGG: afe:Lferr_1683 hypothetical protein.
  
     0.600
Caci_3101
PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: sma:SAV_255 metallopeptidase.
 
      0.570
Caci_4147
Hypothetical protein.
       0.561
Caci_3357
KEGG: cma:Cmaq_1265 hypothetical protein.
  
     0.552
Caci_7483
PFAM: phosphoesterase; KEGG: cjk:jk0010 putative acid phosphatase.
  
     0.532
Caci_7833
KEGG: cma:Cmaq_1265 hypothetical protein.
  
     0.520
Caci_7156
Glucan 1,4-alpha-glucosidase; PFAM: Glucodextranase N; glycoside hydrolase 15- related; KEGG: bid:Bind_3431 glucan 1,4-alpha-glucosidase.
  
     0.508
Caci_1902
KEGG: sco:SCO4985 hypothetical protein.
 
      0.483
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.