STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4158PFAM: protein of unknown function DUF214; KEGG: sgr:SGR_3756 hypothetical protein. (934 aa)    
Predicted Functional Partners:
Caci_4160
PFAM: transcriptional regulator PadR family protein; KEGG: rsa:RSal33209_0622 PadR-like family transcriptional regulator.
 
     0.951
Caci_4159
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgr:SGR_3757 putative ABC transporter ATP- binding protein.
 
  
 0.947
Caci_4806
PFAM: transcriptional regulator PadR family protein; KEGG: sgr:SGR_3758 PadR family transcriptional regulator.
 
     0.794
Caci_4805
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgr:SGR_3757 putative ABC transporter ATP- binding protein.
 
  
 0.778
Caci_4239
Serine/threonine protein kinase; PFAM: Lanthionine synthetase C family protein; SMART: serine/threonine protein kinase; KEGG: sma:SAV_7503 membrane translocator.
  
     0.602
Caci_4161
Hypothetical protein.
       0.516
Caci_4242
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: sma:SAV_7501 ABC transporter ATP-binding membrane translocator, AmfB.
  
     0.516
Caci_4243
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_7500 ABC transporter ATP-binding protein, AmfA.
  
     0.513
Caci_7172
Serine/threonine protein kinase; PFAM: Lanthionine synthetase C family protein; aminoglycoside phosphotransferase; protein of unknown function RIO1; SMART: serine/threonine protein kinase; KEGG: sgr:SGR_2397 AmfT protein.
  
     0.478
Caci_7926
PFAM: transcriptional regulator PadR family protein; KEGG: fal:FRAAL3660 hypothetical protein.
 
     0.452
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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