STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4202PFAM: ABC-2 type transporter; KEGG: stp:Strop_2429 ABC-2 type transporter. (258 aa)    
Predicted Functional Partners:
Caci_4203
PFAM: ABC transporter related; peptidase M50; SMART: AAA ATPase; KEGG: sgr:SGR_4415 putative ABC transporter ATP- binding protein.
  
 0.954
Caci_4201
PFAM: protein of unknown function DUF181; KEGG: sgr:SGR_4417 hypothetical protein.
 
  
 0.925
Caci_4205
PFAM: Lantibiotic dehydratase domain protein; KEGG: saq:Sare_2588 lantibiotic dehydratase domain- containing protein.
 
     0.901
Caci_4207
PFAM: protein of unknown function DUF181; KEGG: sgr:SGR_4410 hypothetical protein.
 
  
 0.885
Caci_4206
PFAM: nitroreductase; KEGG: sgr:SGR_4411 hypothetical protein.
 
     0.871
Caci_4204
KEGG: sgr:SGR_4413 putative lantibiotic biosynthesis protein.
  
    0.852
Caci_3694
PFAM: ABC transporter related; peptidase M50; SMART: AAA ATPase; KEGG: sgr:SGR_4415 putative ABC transporter ATP- binding protein.
  
 0.812
Caci_7343
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_3622 ABC transporter related.
  
 0.765
Caci_4208
PFAM: protein of unknown function DUF181; KEGG: sgr:SGR_4409 hypothetical protein.
  
  
 0.759
Caci_4209
Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: sgr:SGR_4408 putative AfsR-like transcriptional regulator.
 
     0.754
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.