STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4238Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: mva:Mvan_5002 regulatory protein, LuxR. (919 aa)    
Predicted Functional Partners:
Caci_8281
Hypothetical protein; KEGG: nfa:nfa18100 putative transcriptional regulator.
 
   
 0.773
Caci_4237
KEGG: sco:SCO4460 hypothetical protein.
 
 
   0.739
Caci_4117
GAF sensor hybrid histidine kinase; KEGG: sma:SAV_1085 two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein.
  
 
 0.535
Caci_3328
GAF sensor hybrid histidine kinase; KEGG: sma:SAV_1085 two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein.
  
 
 0.534
Caci_1801
PFAM: protein of unknown function DUF1707; KEGG: sma:SAV_5183 hypothetical protein.
 
    0.524
Caci_4239
Serine/threonine protein kinase; PFAM: Lanthionine synthetase C family protein; SMART: serine/threonine protein kinase; KEGG: sma:SAV_7503 membrane translocator.
       0.478
Caci_4240
Hypothetical protein.
       0.478
Caci_1892
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sma:SAV_2033 LuxR family transcriptional regulator.
 
 
0.477
Caci_0958
PFAM: protein of unknown function DUF1707; KEGG: sgr:SGR_4651 hypothetical protein.
 
    0.471
Caci_3619
KEGG: rlt:Rleg2_2482 alpha/beta hydrolase fold protein.
 
     0.470
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.