STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4255KEGG: tpe:Tpen_1785 hypothetical protein. (314 aa)    
Predicted Functional Partners:
Caci_4254
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: nfa:nfa24270 putative peptidase.
     0.978
menC
Mandelate racemase/muconate lactonizing protein; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
     0.966
Caci_4257
PFAM: beta-lactamase; KEGG: pla:Plav_0772 beta-lactamase.
     0.882
menC-2
Mandelate racemase/muconate lactonizing protein; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
     0.850
Caci_4258
Putative transcriptional regulator, PucR family; KEGG: rsa:RSal33209_1306 transcriptional regulator.
 
     0.846
Caci_4253
PFAM: peptidase M19 renal dipeptidase; KEGG: nca:Noca_0102 thermostable dipeptidase.
 
     0.830
Caci_2638
KEGG: sen:SACE_4693 putative transcriptional regulator.
  
     0.532
Caci_4252
Hypothetical protein.
       0.487
Caci_1509
PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: sgr:SGR_1422 putative DNA polymerase III epsilon subunit.
 
      0.437
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.