STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4261KEGG: aau:AAur_4189 hypothetical protein. (202 aa)    
Predicted Functional Partners:
Caci_4262
Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: mab:MAB_3696c putative transcriptional regulator.
  
  
 0.627
Caci_6521
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: mlo:mlr0241 hypothetical protein.
  
     0.580
Caci_4907
KEGG: kra:Krad_2134 hypothetical protein.
  
     0.499
Caci_6507
PFAM: protein of unknown function DUF1486; KEGG: bce:BC0915 hypothetical protein.
 
    0.445
Caci_2468
PFAM: permease; KEGG: mmi:MMAR_1754 hypothetical protein.
   
    0.442
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.