STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4295PFAM: Pyridoxal-dependent decarboxylase; KEGG: sma:SAV_5272 L-2,4-diaminobutyrate decarboxylase. (508 aa)    
Predicted Functional Partners:
Caci_1806
TIGRFAM: 2,4-diaminobutyrate 4-transaminase; PFAM: aminotransferase class-III; KEGG: fra:Francci3_4054 aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 0.970
Caci_4292
PFAM: IucA/IucC family protein; KEGG: saq:Sare_2737 IucA/IucC family protein.
 
  
 0.957
Caci_4294
KEGG: saq:Sare_2739 L-lysine 6-monooxygenase (NADPH).
  
 0.957
Caci_4293
KEGG: saq:Sare_2738 hypothetical protein.
 
  
 0.954
Caci_1807
PFAM: Pyridoxal-dependent decarboxylase; KEGG: fre:Franean1_0661 pyridoxal-dependent decarboxylase.
  
  
 
0.919
argD
TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: kra:Krad_3158 acetylornithine and succinylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
 
 
  
 0.891
Caci_7971
TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: sma:SAV_3420 ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
  
 0.856
Caci_7835
TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: sgr:SGR_1829 putative 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.837
Caci_1811
PFAM: IucA/IucC family protein; KEGG: sgr:SGR_1719 hypothetical protein.
 
  
 0.818
Caci_1810
L-lysine 6-monooxygenase (NADPH); KEGG: sma:SAV_6214 monooxygenase.
  
 0.817
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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