STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4298PFAM: transport system permease protein; KEGG: stp:Strop_2553 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (352 aa)    
Predicted Functional Partners:
Caci_4300
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_2555 ABC transporter related.
 
 0.998
Caci_8853
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sen:SACE_5745 iron ABC transporter ATP- binding protein.
 
 0.996
Caci_8855
PFAM: periplasmic binding protein; KEGG: stp:Strop_4081 periplasmic binding protein.
 
 
 0.975
Caci_4297
PFAM: periplasmic binding protein; KEGG: saq:Sare_2741 periplasmic binding protein.
 
 
 0.970
Caci_4299
PFAM: transport system permease protein; KEGG: saq:Sare_2743 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
0.924
Caci_2040
KEGG: sgr:SGR_5893 hypothetical protein.
 
 
 0.921
Caci_4296
PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: sma:SAV_5273 siderophore-interacting protein.
 
  
 0.819
Caci_4294
KEGG: saq:Sare_2739 L-lysine 6-monooxygenase (NADPH).
     
 0.604
Caci_4292
PFAM: IucA/IucC family protein; KEGG: saq:Sare_2737 IucA/IucC family protein.
  
  
 0.595
Caci_4293
KEGG: saq:Sare_2738 hypothetical protein.
     
 0.565
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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