STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4300PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_2555 ABC transporter related. (303 aa)    
Predicted Functional Partners:
Caci_4298
PFAM: transport system permease protein; KEGG: stp:Strop_2553 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.998
Caci_8854
PFAM: transport system permease protein; KEGG: tfu:Tfu_0657 ABC-type transporter, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.995
Caci_4299
PFAM: transport system permease protein; KEGG: saq:Sare_2743 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 0.975
Caci_4296
PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: sma:SAV_5273 siderophore-interacting protein.
  
 0.956
Caci_4297
PFAM: periplasmic binding protein; KEGG: saq:Sare_2741 periplasmic binding protein.
 
 
 0.941
Caci_8855
PFAM: periplasmic binding protein; KEGG: stp:Strop_4081 periplasmic binding protein.
 
 
 0.939
Caci_2040
KEGG: sgr:SGR_5893 hypothetical protein.
  
 
 0.880
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
 
  
 0.857
Caci_1777
PFAM: iron permease FTR1; KEGG: fra:Francci3_3403 iron permease FTR1.
   
  
 0.784
Caci_3898
PFAM: iron permease FTR1; KEGG: fal:FRAAL1404 putative transmembrane protein.
   
  
 0.608
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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