STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4430PFAM: Wyosine base formation domain protein; KEGG: nfa:nfa56200 hypothetical protein. (264 aa)    
Predicted Functional Partners:
Caci_4431
PFAM: protein of unknown function DUF1446; KEGG: nfa:nfa53320 hypothetical protein.
 
     0.913
Caci_4432
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: nfa:nfa53310 putative acyl-CoA dehydrogenase.
 
     0.825
Caci_4433
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: rha:RHA1_ro01931 methylcrotonoyl-CoA carboxylase, beta chain.
 
     0.816
Caci_4436
PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro01927 TetR family transcriptional regulator.
 
     0.798
Caci_4435
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mmi:MMAR_4536 enoyl-CoA hydratase EchA7.
 
     0.751
Caci_4434
Biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: nfa:nfa53290 putative acetyl/propionyl-CoA carboxylase alpha subunit.
       0.717
Caci_6153
PFAM: protein of unknown function DUF1446; KEGG: fal:FRAAL1670 hypothetical protein.
 
     0.569
Caci_2226
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: sen:SACE_3243 acyl-CoA dehydrogenase.
  
     0.498
Caci_3553
KEGG: rha:RHA1_ro03945 hypothetical protein.
  
     0.494
Caci_4429
PFAM: protein of unknown function DUF1025; KEGG: fre:Franean1_6886 hypothetical protein.
       0.477
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.