STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4462Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: ace:Acel_0393 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family. (419 aa)    
Predicted Functional Partners:
Caci_1144
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: sgr:SGR_3466 putative D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
  
  0.972
Caci_8432
TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: sma:SAV_4662 D-alanyl-D-alanine carboxypeptidase.
     
 0.934
Caci_5787
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: hya:HY04AAS1_1111 peptidase S11 D-alanyl-D- alanine carboxypeptidase 1; Belongs to the peptidase S11 family.
  
  
 
0.928
Caci_8459
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: sma:SAV_3413 D-alanyl-D-alanine carboxypeptidase.
  
  
 
0.913
Caci_2293
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: nfa:nfa32010 hypothetical protein.
     
 0.910
Caci_4461
Putative transcriptional regulator, MerR family; KEGG: mul:MUL_1446 conserved hypothetical secreted protein.
       0.573
Caci_4460
PFAM: Vault protein inter-alpha-trypsin domain protein; von Willebrand factor type A; SMART: von Willebrand factor type A; Vault protein inter-alpha-trypsin, metazoa; KEGG: mmi:MMAR_3543 hypothetical protein.
       0.506
Caci_9044
PFAM: cell wall hydrolase/autolysin; Peptidoglycan- binding domain 1 protein; SMART: cell wall hydrolase/autolysin; KEGG: saq:Sare_5099 cell wall hydrolase/autolysin.
 
  
 0.455
murA
UDP-N-acetylglucosamine1- carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
  
 0.438
Caci_4845
TIGRFAM: RNA polymerase sigma-70 factor, sigma- B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 4 domain protein; KEGG: sco:SCO5243 RNA polymerase sigma factor.
  
     0.426
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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