STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4469PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO2490 dehydrogenase (secreted protein). (272 aa)    
Predicted Functional Partners:
Caci_4468
KEGG: stp:Strop_1717 hypothetical protein.
       0.773
Caci_7193
PFAM: short-chain dehydrogenase/reductase SDR; NADP oxidoreductase coenzyme F420-dependent; KEGG: gdi:GDI2727 hypothetical protein.
  
     0.756
Caci_3280
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sma:SAV_1851 dehydrogenase.
 
    0.730
Caci_4560
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gdi:GDI2727 hypothetical protein.
  
     0.726
Caci_6716
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sgl:SG1486 putative short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.633
Caci_6366
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: fre:Franean1_5810 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.615
Caci_4467
PFAM: isochorismatase hydrolase; KEGG: mxa:MXAN_3644 isochorismatase.
  
  
 0.591
Caci_1044
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mva:Mvan_0234 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.563
Caci_5200
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rha:RHA1_ro00215 short chain dehydrogenase.
  
 
   0.494
Caci_4470
PFAM: methyltransferase small; Methyltransferase type 12; KEGG: sco:SCO0760 methyltransferase.
       0.490
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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