STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4528PFAM: major facilitator superfamily MFS_1; KEGG: yen:YE2035 putative membrane transport protein. (409 aa)    
Predicted Functional Partners:
Caci_0258
PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: stp:Strop_2409 major facilitator transporter.
  
     0.772
Caci_8128
PFAM: major facilitator superfamily MFS_1; KEGG: saq:Sare_0365 major facilitator transporter.
  
     0.772
Caci_4752
PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_6801 major facilitator superfamily permease.
  
     0.765
Caci_8782
PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_566 major facilitator superfamily permease.
  
     0.756
Caci_0482
PFAM: major facilitator superfamily MFS_1; KEGG: lxx:Lxx06835 major facilitator superfamily H(+) antiporter.
  
     0.711
Caci_2101
PFAM: major facilitator superfamily MFS_1; KEGG: saq:Sare_0236 major facilitator transporter.
  
     0.710
Caci_5643
PFAM: major facilitator superfamily MFS_1; KEGG: sus:Acid_2199 major facilitator transporter.
  
     0.538
Caci_4527
PFAM: Aldehyde Dehydrogenase; KEGG: sma:SAV_7177 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
    0.456
Caci_4526
PFAM: protein of unknown function DUF779; KEGG: sco:SCO1192 hypothetical protein.
       0.454
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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