STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4542PFAM: branched-chain amino acid transport; KEGG: fal:FRAAL3548 putative inner membrane protein. (106 aa)    
Predicted Functional Partners:
Caci_4543
PFAM: AzlC family protein; KEGG: fal:FRAAL3549 putative branched-chain amino acid permease (azaleucine resistance).
 
   
 0.962
Caci_4544
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: nfa:nfa13110 putative DNA-binding protein.
 
   
 0.928
Caci_5052
PFAM: protein of unknown function DUF574; KEGG: sco:SCO0525 hypothetical protein.
  
     0.613
Caci_6213
PFAM: protein of unknown function DUF574; KEGG: sen:SACE_6478 hypothetical protein.
  
     0.599
Caci_5361
PFAM: protein of unknown function DUF574; KEGG: fal:FRAAL0617 hypothetical protein.
 
     0.560
Caci_5110
PFAM: protein of unknown function DUF574; KEGG: sma:SAV_2177 hypothetical protein.
  
     0.549
Caci_3291
PFAM: protein of unknown function DUF574; KEGG: fal:FRAAL4035 hypothetical protein.
 
     0.546
Caci_1980
PFAM: protein of unknown function DUF574; Methyltransferase type 12; KEGG: fra:Francci3_1003 hypothetical protein.
  
     0.535
Caci_3201
PFAM: protein of unknown function DUF574; KEGG: fra:Francci3_1003 hypothetical protein.
  
     0.513
Caci_2740
PFAM: protein of unknown function DUF574; KEGG: sma:SAV_4789 hypothetical protein.
  
     0.511
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.