STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4664PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: saq:Sare_1307 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (308 aa)    
Predicted Functional Partners:
Caci_4665
PFAM: 4-oxalocrotonate tautomerase; KEGG: stp:Strop_2370 4-oxalocrotonate tautomerase.
       0.779
Caci_4663
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: stp:Strop_2373 short-chain dehydrogenase/reductase SDR.
 
   
0.715
Caci_4666
Transcriptional regulator, winged helix family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: sen:SACE_0421 putative transcriptional regulator.
       0.577
Caci_4231
PFAM: alpha/beta hydrolase fold protein; KEGG: cti:RALTA_A1627 putative epoxide hydrolase.
  
     0.527
Caci_4662
SMART: helix-turn-helix domain protein; KEGG: sco:SCO4680 DNA-binding protein.
 
     0.495
Caci_2182
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: saq:Sare_2205 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.463
Caci_7135
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sco:SCO0511 dehydrogenase (secreted protein).
 
    0.457
Caci_6716
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sgl:SG1486 putative short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.454
Caci_1044
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mva:Mvan_0234 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.451
Caci_7193
PFAM: short-chain dehydrogenase/reductase SDR; NADP oxidoreductase coenzyme F420-dependent; KEGG: gdi:GDI2727 hypothetical protein.
 
    0.442
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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