STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4697PFAM: extracellular solute-binding protein family 1; KEGG: msm:MSMEG_0515 probable sugar transporter sugar binding lipoprotein. (442 aa)    
Predicted Functional Partners:
Caci_4696
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO0539 sugar transporter membrane protein.
 
 
 0.955
Caci_4695
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO0540 sugar transport membrane protein.
 
 
 0.953
Caci_4693
PFAM: glycoside hydrolase family 4; KEGG: msm:MSMEG_0514 alpha-galactosidase.
 
     0.799
Caci_4694
PFAM: sugar isomerase (SIS); KEGG: sma:SAV_1446 putave phosphosugar isomerase.
 
    0.716
Caci_4985
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_1220 probable uspA protein.
 
 
 0.686
Caci_4986
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_1221 probable sugar transport inner membrane protein.
 
 
 0.668
Caci_2417
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsa:RSal33209_1015 ABC transporter sugar permease.
 
 
 0.629
Caci_6903
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_3252 putative ABC-type sugar transport system, permease component.
 
 
 0.625
Caci_7904
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcz:BCZK1636 sugar ABC transporter, permease.
 
 
 0.625
Caci_4689
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcz:BCZK1635 sugar ABC transporter, permease.
 
   0.617
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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