STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4851PFAM: Luciferase-like monooxygenase; KEGG: sco:SCO7290 dehydrogenase. (321 aa)    
Predicted Functional Partners:
Caci_4850
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sen:SACE_4385 HAD family hydrolase.
 
    0.803
Caci_7611
TIGRFAM: LPPG domain protein containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: sgr:SGR_4501 hypothetical protein.
 
   
 0.746
Caci_5942
KEGG: rrs:RoseRS_1517 coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein.
  
     0.735
Caci_6491
KEGG: saq:Sare_2317 luciferase family protein.
  
     0.720
Caci_7612
TIGRFAM: F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; nitroreductase; KEGG: sco:SCO3037 F420-0--gamma-glutamyl ligase.
 
  
 0.707
Caci_4793
PFAM: Luciferase-like monooxygenase; KEGG: sco:SCO1669 ATP/GTP-binding protein.
  
     0.677
Caci_6160
Conserved hypothetical protein; KEGG: msm:MSMEG_2850 mycobacterial family protein 11 protein.
  
   
 0.673
Caci_5872
KEGG: nfa:nfa18080 hypothetical protein.
  
   
 0.656
Caci_5649
PFAM: Luciferase-like monooxygenase; KEGG: sgr:SGR_5193 putative oxidoreductase.
  
     0.651
Caci_3175
PFAM: Luciferase-like monooxygenase; KEGG: rxy:Rxyl_0369 luciferase-like protein.
  
     0.641
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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