STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4859PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: fra:Francci3_1983 D-lactate dehydrogenase (cytochrome). (1043 aa)    
Predicted Functional Partners:
Caci_4857
PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; KEGG: sen:SACE_5551 pyruvate decarboxylase; Belongs to the TPP enzyme family.
 
 
 
 0.779
Caci_4858
PFAM: glycoside hydrolase 15-related; KEGG: mpa:MAP1384c hypothetical protein.
 
     0.769
Caci_1464
PFAM: protein of unknown function DUF162; KEGG: sco:SCO0817 hypothetical protein.
  
 
 0.717
Caci_1463
TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: mgi:Mflv_3703 iron-sulfur cluster binding protein.
  
 
 0.700
Caci_8703
KEGG: fre:Franean1_4815 hypothetical protein.
  
 
 0.700
Caci_5702
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: sgr:SGR_5483 putative glutamate synthase (NADPH) large subunit.
     
 0.689
Caci_6197
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.650
Caci_0713
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.580
Caci_1297
PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: tfu:Tfu_0593 electron transfer flavoprotein, beta subunit.
  
 
 0.578
Caci_2472
PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: nca:Noca_1815 electron transfer flavoprotein beta-subunit.
  
 
 0.578
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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