STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4863PFAM: transcriptional regulator PadR family protein; KEGG: kra:Krad_1942 PadR-like family transcriptional regulator. (186 aa)    
Predicted Functional Partners:
Caci_1362
PFAM: transcriptional regulator PadR family protein; KEGG: rha:RHA1_ro02485 PadR family transcriptional regulator.
  
     0.760
Caci_4160
PFAM: transcriptional regulator PadR family protein; KEGG: rsa:RSal33209_0622 PadR-like family transcriptional regulator.
  
     0.645
Caci_7926
PFAM: transcriptional regulator PadR family protein; KEGG: fal:FRAAL3660 hypothetical protein.
  
     0.611
Caci_4862
Beta-carotene 15,15'-monooxygenase; PFAM: Carotenoid oxygenase; KEGG: sen:SACE_0013 lignostilbene-alpha/beta- dioxygenase.
       0.563
Caci_4806
PFAM: transcriptional regulator PadR family protein; KEGG: sgr:SGR_3758 PadR family transcriptional regulator.
  
     0.532
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.