STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4871PFAM: condensation domain protein; KEGG: sgr:SGR_5180 hypothetical protein. (477 aa)    
Predicted Functional Partners:
Caci_7000
PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: hau:Haur_3965 beta-ketoacyl synthase.
 
 
 0.853
Caci_7002
PFAM: Acyl transferase; KR domain protein; Beta- ketoacyl synthase; Erythronolide synthase docking; short- chain dehydrogenase/reductase SDR; phosphopantetheine- binding; KEGG: stp:Strop_2768 beta-ketoacyl synthase.
 
 
 0.850
Caci_3458
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_4601 non-ribosomal peptide synthase.
 
 
 0.839
Caci_7003
PFAM: short-chain dehydrogenase/reductase SDR; Beta- ketoacyl synthase; KR domain protein; Acyl transferase; Erythronolide synthase docking; phosphopantetheine- binding; NAD-dependent epimerase/dehydratase; KEGG: sma:SAV_418 modular polyketide synthase.
 
 
 0.760
Caci_7004
PFAM: Acyl transferase; short-chain dehydrogenase/reductase SDR; Beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding; KEGG: sgr:SGR_6179 putative type-I PKS.
 
 
 0.745
Caci_5064
PFAM: MbtH domain protein; KEGG: stp:Strop_4421 MbtH domain-containing protein.
 
 
 0.733
Caci_3263
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: saq:Sare_0484 3-oxoacyl-(ACP) synthase III.
 
  
 0.722
Caci_2592
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; phosphopantetheine-binding; Non- ribosomal peptide synthetase; condensation domain protein; KEGG: scl:sce4135 hybrid polyketide synthase/nonribosomal peptide synthetase.
 
 
 0.714
Caci_3446
PFAM: MbtH domain protein; KEGG: sen:SACE_4284 MbtH-like protein.
 
 
 0.688
Caci_1413
KEGG: nca:Noca_2281 hypothetical protein.
  
    0.660
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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