STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4902PFAM: AMP-dependent synthetase and ligase; KEGG: sen:SACE_2795 putative feruloyl-CoA synthetase. (501 aa)    
Predicted Functional Partners:
Caci_3423
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: sma:SAV_848 non-ribosomal peptide synthetase.
  
0.927
Caci_3433
PFAM: condensation domain protein; phosphopantetheine-binding; KEGG: scl:sce8257 non-ribosomal peptide synthetase.
 
 
 0.889
Caci_7002
PFAM: Acyl transferase; KR domain protein; Beta- ketoacyl synthase; Erythronolide synthase docking; short- chain dehydrogenase/reductase SDR; phosphopantetheine- binding; KEGG: stp:Strop_2768 beta-ketoacyl synthase.
 
 0.889
Caci_3434
PFAM: AMP-dependent synthetase and ligase; KEGG: pap:PSPA7_2121 linear gramicidin synthetase subunit C.
 
    
0.881
Caci_4901
PFAM: amidohydrolase 2; KEGG: rpe:RPE_4121 amidohydrolase 2.
 
    0.830
Caci_4900
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rha:RHA1_ro05124 reductase.
 
 
 0.819
Caci_7003
PFAM: short-chain dehydrogenase/reductase SDR; Beta- ketoacyl synthase; KR domain protein; Acyl transferase; Erythronolide synthase docking; phosphopantetheine- binding; NAD-dependent epimerase/dehydratase; KEGG: sma:SAV_418 modular polyketide synthase.
 
 0.810
Caci_2592
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; phosphopantetheine-binding; Non- ribosomal peptide synthetase; condensation domain protein; KEGG: scl:sce4135 hybrid polyketide synthase/nonribosomal peptide synthetase.
 
0.802
Caci_4903
PFAM: MaoC domain protein dehydratase; KEGG: rha:RHA1_ro05122 nodulation protein.
 
   
 0.718
Caci_3458
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_4601 non-ribosomal peptide synthase.
 
 
0.693
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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