STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4960PFAM: Rare lipoprotein A; KEGG: fre:Franean1_5557 rare lipoprotein A. (337 aa)    
Predicted Functional Partners:
Caci_0861
PFAM: glycoside hydrolase family 5; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.635
Caci_3514
PFAM: Polymorphic membrane protein Chlamydia; KEGG: scl:sce3327 extracellular nuclease.
  
     0.632
Caci_5223
PFAM: Alpha-L-arabinofuranosidase B catalytic; Ricin B lectin; SMART: Ricin B lectin; KEGG: hypothetical protein.
  
   
 0.632
Caci_4961
PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta- sandwich; KEGG: sma:SAV_2095 beta-galactosidase.
       0.631
Caci_4972
Xylan 1,4-beta-xylosidase; PFAM: Alpha-L-arabinofuranosidase B catalytic; KEGG: hypothetical protein.
  
     0.620
Caci_7478
Xylan 1,4-beta-xylosidase; PFAM: Alpha-L-arabinofuranosidase B catalytic; KEGG: hypothetical protein.
  
     0.604
Caci_1350
KEGG: sco:SCO0909 hypothetical protein.
  
     0.574
Caci_5160
Xylan 1,4-beta-xylosidase; PFAM: Alpha-L-arabinofuranosidase B catalytic; alpha-L-arabinofuranosidase B; KEGG: fungal alpha-L-arabinofuranosidase.
  
   
 0.568
Caci_4882
PFAM: Alpha-L-arabinofuranosidase B catalytic; Ricin B lectin; SMART: Ricin B lectin; KEGG: fungal alpha-L-arabinofuranosidase.
  
   
 0.542
Caci_4873
PFAM: Alpha-L-arabinofuranosidase B catalytic; Ricin B lectin; SMART: Ricin B lectin; KEGG: fungal alpha-L-arabinofuranosidase.
  
   
 0.517
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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