STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4967Hypothetical protein; KEGG: sus:Acid_3219 glycosyl hydrolase. (876 aa)    
Predicted Functional Partners:
Caci_2286
PFAM: Acetoacetate decarboxylase; KEGG: sma:SAV_6441 hypothetical protein.
  
     0.761
Caci_5806
KEGG: sma:SAV_144 hypothetical protein.
 
     0.756
Caci_6156
KEGG: fra:Francci3_2235 hypothetical protein.
  
     0.708
Caci_4335
PFAM: phosphoesterase; KEGG: sus:Acid_4558 YVTN beta-propeller repeat- containing protein.
 
 
 
 0.698
Caci_6277
KEGG: sma:SAV_37 hypothetical protein.
  
     0.692
Caci_6157
PFAM: Fibronectin type III domain protein; PKD domain containing protein; phosphoesterase; SMART: PKD domain containing protein; Fibronectin type III domain protein; KEGG: sus:Acid_7414 hypothetical protein.
 
    0.691
Caci_5446
KEGG: fre:Franean1_0195 hypothetical protein.
  
 
   0.664
Caci_5379
KEGG: bid:Bind_0259 putative 3-carboxymuconate cyclase.
  
     0.657
Caci_5803
PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: sma:SAV_3465 integral membrane protein.
  
     0.643
Caci_8605
PFAM: pentapeptide repeat protein; KEGG: fre:Franean1_6336 pentapeptide repeat- containing protein.
  
     0.640
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.