Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Caci_5000Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mjl:Mjls_1182 MarR family transcriptional regulator. (168 aa)    
Predicted Functional Partners:
Caci_5001
KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20.
       0.773
Caci_4999
SMART: helix-turn-helix domain protein; KEGG: mva:Mvan_1062 XRE family transcriptional regulator.
   
   0.749
Caci_4998
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: kra:Krad_2209 alcohol dehydrogenase.
 
     0.654
Caci_8691
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: nfa:nfa2040 putative transcriptional regulator.
  
     0.605
Caci_5002
PFAM: Carbohydrate binding family 6; KEGG: sma:SAV_1077 melibiase.
       0.542
Caci_7225
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sgr:SGR_3388 MarR family transcriptional regulator.
  
     0.516
Caci_4762
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: nca:Noca_3853 regulatory protein, MarR.
  
   
 0.504
Caci_0118
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sco:SCO3133 MarR family regulatory protein.
  
   
 0.483
Caci_3848
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; PDZ/DHR/GLGF domain protein; KEGG: hau:Haur_0270 MarR family transcriptional regulator.
  
   
 0.477
Caci_8699
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: kra:Krad_1049 MarR family transcriptional regulator.
  
   
 0.453
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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