STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5007KEGG: sma:SAV_1475 alpha-galactosidase; PFAM: coagulation factor 5/8 type domain protein; Glycosyl hydrolase family 98 putative carbohydrate binding module; glycoside hydrolase clan GH-D; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module. (850 aa)    
Predicted Functional Partners:
Caci_6868
Beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: sal:Sala_1017 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.835
Caci_2654
Beta-galactosidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: sal:Sala_1017 beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.833
Caci_7101
Beta-galactosidase; PFAM: glycoside hydrolase family 35; Glycoside hydrolase family 42 domain protein; KEGG: sen:SACE_0306 beta-galactosidase.
 
 
 0.826
Caci_4420
Beta-galactosidase; PFAM: glycoside hydrolase family 35; Glycoside hydrolase family 42 domain protein; KEGG: cmi:CMM_2700 putative beta-galactosidase.
 
 
 0.815
Caci_6252
PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: sma:SAV_1077 melibiase.
 
  
0.757
Caci_6873
PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: sma:SAV_1077 melibiase.
 
  
0.755
Caci_7223
PFAM: glycoside hydrolase clan GH-D; KEGG: sma:SAV_1077 melibiase.
 
  
0.754
Caci_6874
Alpha-galactosidase; PFAM: glycoside hydrolase clan GH-D; KEGG: sma:SAV_1077 melibiase.
  
  
 
0.745
Caci_4641
PFAM: Ricin B lectin; glycoside hydrolase clan GH- D; SMART: Ricin B lectin; KEGG: alpha-D-galactosidase (melibiase).
 
  
0.737
Caci_4961
PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta- sandwich; KEGG: sma:SAV_2095 beta-galactosidase.
 
  
  0.736
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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