STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_5043PFAM: 2-nitropropane dioxygenase NPD; KEGG: mav:MAV_2990 oxidoreductase. (345 aa)    
Predicted Functional Partners:
Caci_6173
PFAM: major facilitator superfamily MFS_1; KEGG: fra:Francci3_1315 major facilitator transporter.
  
 
 0.912
Caci_4475
KEGG: sco:SCO6532 nitrate reductase gamma chain NarI; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit.
    
  0.902
Caci_4477
TIGRFAM: nitrate reductase, beta subunit; KEGG: sco:SCO6534 nitrate reductase beta chain NarH.
    
  0.902
Caci_4478
TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sco:SCO6535 nitrate reductase alpha chain NarG; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
  0.901
Caci_6174
TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: sen:SACE_3803 nitrite reductase (NAD(P)H) small subunit.
     
  0.900
Caci_6175
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta- component ferrodoxin domain protein; KEGG: sma:SAV_5661 nitrite reductase (NAD(P)H) large subunit.
     
  0.900
Caci_6176
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: saq:Sare_4259 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
     
  0.900
Caci_6177
PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: nca:Noca_0350 assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
  0.900
Caci_8739
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mjl:Mjls_3242 nitrite reductase (NAD(P)H), large subunit.
     
  0.900
tadA
CMP/dCMP deaminase zinc-binding; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
    
 0.603
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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